2024
Oliver, A., Podell, S., Wegley Kelly, L., Sparagon, W. J., Plominsky, A. M., Nelson, R. S., Laurens, L. M. L., Augyte, S., Sims, N. A., Nelson, C. E., & Allen, E. E. (2024). Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. MBio, e00496-24. https://doi.org/10.1128/mbio.00496-24
Thobor, B. M., Haas, A. F., Wild, C., Nelson, C. E., Wegley Kelly, L., Hehemann, J.-H., Arts, M. G. I., Boer, M., Buck-Wiese, H., Nguyen, N. P., Hellige, I., & Mueller, B. (2024). Coral high molecular weight carbohydrates support opportunistic microbes in bacterioplankton from an algae-dominated reef. MSystems, e00832-24. https://doi.org/10.1128/msystems.00832-24
Yus, J., Nixon, E. N., Li, J., Noriega Gimenez, J., Bennett, M.-J., Flores, D., Marhaver, K. L., Wegley Kelly, L., Espinosa-Marzal, R. M., & Wagoner Johnson, A. J. (2024). Composite substrates for coral larval settlement and reef restoration based on natural hydraulic lime and inorganic strontium and magnesium compounds. Ecological Engineering, 202, 107236. https://doi.org/10.1016/j.ecoleng.2024.107236
2023
Nelson, C. E., Wegley Kelly, L., & Haas, A. F. (2023). Microbial Interactions with Dissolved Organic Matter Are Central to Coral Reef Ecosystem Function and Resilience. Annual Review of Marine Science, 15(1), 431–460. https://doi.org/10.1146/annurev-marine-042121-080917
Candy, A. S., Taylor Parkins, S. K., Van Duyl, F. C., Mueller, B., Arts, M. G. I., Barnes, W., Carstensen, M., Scholten, Y. J. H., El-Khaled, Y. C., Wild, C., Wegley Kelly, L., Nelson, C. E., Sandin, S. A., Vermeij, M. J. A., Rohwer, F. L., Picioreanu, C., Stocchi, P., & Haas, A. F. (2023). Small-scale oxygen distribution patterns in a coral reef. Frontiers in Marine Science, 10, 1135686. https://doi.org/10.3389/fmars.2023.1135686
Silveira, C. B., Luque, A., Haas, A. F., Roach, T. N. F., George, E. E., Knowles, B., Little, M., Sullivan, C. J., Varona, N. S., Wegley Kelly, L., Brainard, R., Rohwer, F., & Bailey, B. (2023). Viral predation pressure on coral reefs. BMC Biology, 21(1), 77. https://doi.org/10.1186/s12915-023-01571-9
Mannochio-Russo, H., Swift, S. O. I., Nakayama, K. K., Wall, C. B., Gentry, E. C., Panitchpakdi, M., Caraballo-Rodriguez, A. M., Aron, A. T., Petras, D., Dorrestein, K., Dorrestein, T. K., Williams, T. M., Nalley, E. M., Altman-Kurosaki, N. T., Martinelli, M., Kuwabara, J. Y., Darcy, J. L., Bolzani, V. S., Wegley Kelly, L., … Nelson, C. E. (2023). Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses. Communications Biology, 6(1), 896. https://doi.org/10.1038/s42003-023-05230-1
Quinlan, Z. A., Bennett, M.-J., Arts, M. G. I., Levenstein, M., Flores, D., Tholen, H. M., Tichy, L., Juarez, G., Haas, A. F., Chamberland, V. F., Latijnhouwers, K. R. W., Vermeij, M. J. A., Johnson, A. W., Marhaver, K. L., & Kelly, L. W. (2023). Coral larval settlement induction using tissue-associated and exuded coralline algae metabolites and the identification of putative chemical cues. Proceedings of the Royal Society B: Biological Sciences, 290(2009), 20231476. https://doi.org/10.1098/rspb.2023.1476
2022
Levenstein, M. A., Marhaver, K. L., Quinlan, Z. A., Tholen, H. M., Tichy, L., Yus, J., Lightcap, I., Kelly, L. W., Juarez, G., Vermeij, M. J. A., & Johnson, A. J. W. (2022). Composite substrates reveal inorganic material cues for coral larval settlement. Acs Sustainable Chemistry & Engineering, 10(12), 3960–3971. https://doi.org/10.1021/acssuschemeng.1c08313
Levenstein, M. A., Gysbers, D. J., Marhaver, K. L., Kattom, S., Tichy, L., Quinlan, Z., Tholen, H. M., Wegley Kelly, L., Vermeij, M. J. A., Wagoner Johnson, A. J., & Juarez, G. (2022). Millimeter-scale topography facilitates coral larval settlement in wave-driven oscillatory flow. PLOS ONE, 17(9), e0274088. https://doi.org/10.1371/journal.pone.0274088
Quinlan, Z. A., Koester, I., Aron, A. T., Petras, D., Aluwihare, L. I., Dorrestein, P. C., Nelson, C. E., & Wegley Kelly, L. (2022). ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and In Silico Metabolite Structure Prediction. Metabolites, 12(12), 1275. https://doi.org/10.3390/metabo12121275
2021
Little, M., George, E. E., Arts, M. G. I., Shivak, J., Benler, S., Huckeba, J., Quinlan, Z. A., Boscaro, V., Mueller, B., Guemes, A. G. C., Rojas, M. I., White, B., Petras, D., Silveira, C. B., Haas, A. F., Kelly, L. W., Vermeij, M. J. A., Quinn, R. A., Keeling, P. J., … Roach, T. N. F. (2021). Three-dimensional molecular cartography of the Caribbean reef-building coral Orbicella faveolata. Frontiers in Marine Science, 8. https://doi.org/ARTN 627724 10.3389/fmars.2021.627724
Roach, T. N. F., Little, M., Arts, M. G. I., Huckeba, J., Haas, A. F., George, E. E., Quinn, R. A., Cobian-Guemes, A. G., Naliboff, D. S., Silveria, C. B., Vermeij, M. J. A., Kelly, L. W., Dorrestein, P. C., & Rohwer, F. (2021). A multiomic analysis of in situ coral-turf algal interactions. Proceedings of the National Academy of Sciences of the United States of America, 117(24), 13588–13595. https://doi.org/10.1073/pnas.1915455117
Kelly, L. W., Nelson, C. E., Aluwihare, L. I., Arts, M. G. I., Dorrestein, P. C., Koester, I., Matsuda, S. B., Petras, D., Quinlan, Z. A., & Haas, A. F. (2021). Molecular commerce on coral reefs: Using metabolomics to reveal biochemical exchanges underlying holobiont biology and the ecology of coastal ecosystems. Frontiers in Marine Science, 8, 11. https://doi.org/10.3389/fmars.2021.630799
Remple, K. L., Silbiger, N. J., Quinlan, Z. A., Fox, M. D., Kelly, L. W., Donahue, M. J., & Nelson, C. E. (2021). Coral reef biofilm bacterial diversity and successional trajectories are structured by reef benthic organisms and shift under chronic nutrient enrichment. Npj Biofilms and Microbiomes, 7(1), 11. https://doi.org/10.1038/s41522-021-00252-1
2019
James, A. K., Kelly, L. W., Nelson, C. E., Wilbanks, E. G., & Carlson, C. A. (2019). Elevated pCO(2) alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter. Environmental Microbiology, 21(2), 541–556. https://doi.org/10.1111/1462-2920.14484
Kelly, L. W., Nelson, C. E., Haas, A. F., Naliboff, D. S., Calhoun, S., Carlson, C. A., Edwards, R. A., Fox, M. D., Hatay, M., Johnson, M. D., Kelly, E. L. A., Lim, Y. W., Macherla, S., Quinlan, Z. A., Silva, G. G. Z., Vermeij, M. J. A., Zgliczynski, B., Sandin, S. A., Smith, J. E., & Rohwer, F. (2019). Diel population and functional synchrony of microbial communities on coral reefs. Nature Communications, 10. https://doi.org/10.1038/s41467-019-09419-z
2018
Linda Wegley Kelly, Andreas F. Haas, & Craig E. Nelson. (2018). Ecosystem microbiology of coral reefs: Linking genomic, metabolomic, and biogeochemical Dynamics from animal symbioses to reefscape processes. MSystems, 3(2), e00162-17. https://doi.org/doi:10.1128/mSystems.00162-17
Nakajima, R., Haas, A. F., Silveira, C. B., Kelly, E. L. A., Smith, J. E., Sandin, S., Kelly, L. W., Rohwer, F., Nakatomi, N., & Kurihara, H. (2018). Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation. Journal of Experimental Marine Biology and Ecology, 504, 53–60. https://doi.org/10.1016/j.jembe.2018.02.008
Quinlan, Z. A., Remple, K., Fox, M. D., Silbiger, N. J., Oliver, T. A., Putnam, H. M., Kelly, L. W., Carlson, C. A., Donahue, M. J., & Nelson, C. E. (2018). Fluorescent organic exudates of corals and algae in tropical reefs are compositionally distinct and increase with nutrient enrichment. Limnology and Oceanography Letters, 3(4), 331–340. https://doi.org/10.1002/lol2.10074
2017
Roach, T. N. F., Abieri, M. L., George, E. E., Knowles, B., Naliboff, D. S., Smurthwaite, C. A., Kelly, L. W., Haas, A. F., & Rohwer, F. L. (2017). Microbial bioenergetics of coral-algal interactions. PeerJ, 5, e3423. https://doi.org/10.7717/peerj.3423
Knowles, B., Bailey, B., Boling, L., Breitbart, M., Cobian-Guemes, A., del Campo, J., Edwards, R., Felts, B., Grasis, J., Haas, A. F., Katira, P., Kelly, L. W., Luque, A., Nulton, J., Paul, L., Peters, G., Robinett, N., Sandin, S., Segall, A., … Rohwer, F. (2017). Variability and host density independence in inductions-based estimates of environmental lysogeny. Nature Microbiology, 2(7). https://doi.org/10.1038/nmicrobiol.2017.64
Petras, D., Koester, I., Da Silva, R., Stephens, B. M., Haas, A. F., Nelson, C. E., Kelly, L. W., Aluwihare, L. I., & Dorrestein, P. C. (2017). High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter. Frontiers in Marine Science, 4(405). https://doi.org/10.3389/fmars.2017.00405
2016
Knowles, B., Silveira, C. B., Bailey, B. A., Barott, K., Cantu, V. A., Cobian-Guemes, A. G., Coutinho, F. H., Dinsdale, E. A., Felts, B., Furby, K. A., George, E. E., Green, K. T., Gregoracci, G. B., Haas, A. F., Haggerty, J. M., Hester, E. R., Hisakawa, N., Kelly, L. W., Lim, Y. W., … Rohwer, F. (2016). Lytic to temperate switching of viral communities. Nature, 531(7595), 466-+. https://doi.org/10.1038/nature17193
Haas, A. F., Fairoz, M. F. M., Kelly, L. W., Nelson, C. E., Dinsdale, E. A., Edwards, R. A., Giles, S., Hatay, M., Hisakawa, N., Knowles, B., Lim, Y. W., Maughan, H., Pantos, O., Roach, T. N. F., Sanchez, S. E., Silveira, C. B., Sandin, S., Smith, J. E., & Rohwer, F. (2016). Global microbialization of coral reefs. Nature Microbiology, 1(6). https://doi.org/10.1038/nmicrobiol.2016.42
Quistad, S. D., Lim, Y. W., Silva, G. G. Z., Nelson, C. E., Haas, A. F., Kelly, L. W., Edwards, R. A., & Rohwer, F. L. (2016). Using viromes to predict novel immune proteins in non-model organisms. Proceedings of the Royal Society B: Biological Sciences, 283(1837), 20161200. https://doi.org/10.1098/rspb.2016.1200
2014
Kelly, L. W., Williams, G. J., Barott, K. L., Carlson, C. A., Dinsdale, E. A., Edwards, R. A., Haas, A. F., Haynes, M., Lim, Y. W., McDole, T., Nelson, C. E., Sala, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Youle, M., & Rohwer, F. (2014). Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proceedings of the National Academy of Sciences of the United States of America, 111(28), 10227–10232. https://doi.org/10.1073/pnas.1403319111
Lim, Y. W., Cuevas, D. A., Silva, G. G. Z., Aguinaldo, K., Dinsdale, E. A., Haas, A. F., Hatay, M., Sanchez, S. E., Wegley-Kelly, L., Dutilh, B. E., Harkins, T. T., Lee, C. C., Tom, W., Sandin, S. A., Smith, J. E., Zgliczynski, B., Vermeij, M. J. A., Rohwer, F., & Edwards, R. A. (2014). Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. PeerJ, 2. https://doi.org/10.7717/peerj.520
Haas, A. F., Knowles, B., Lim, Y. W., McDole Somera, T., Kelly, L. W., Hatay, M., & Rohwer, F. (2014). Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology. J Vis Exp, 93, e52131. https://doi.org/10.3791/52131
2013
Nelson, C. E., Goldberg, S. J., Kelly, L. W., Haas, A. F., Smith, J. E., Rohwer, F., & Carlson, C. A. (2013). Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages. Isme Journal, 7(5), 962–979. https://doi.org/10.1038/ismej.2012.161
Haas, A. F., Nelson, C. E., Rohwer, F., Wegley-Kelly, L., Quistad, S. D., Carlson, C. A., Leichter, J. J., Hatay, M., & Smith, J. E. (2013). Influence of coral and algal exudates on microbially mediated reef metabolism. PeerJ, 1, e108. https://doi.org/10.7717/peerj.108
2012
Kelly, L. W., Barott, K. L., Dinsdale, E., Friedlander, A. M., Nosrat, B., Obura, D., Sala, E., Sandin, S. A., Smith, J. E., Vermeij, M. J. A., Williams, G. J., Willner, D., & Rohwer, F. (2012). Black reefs: iron-induced phase shifts on coral reefs. Isme Journal, 6(3), 638–649. https://doi.org/10.1038/ismej.2011.114
2011
Haas, A. F., Nelson, C. E., Wegley Kelly, L., Carlson, C. A., Rohwer, F., Leichter, J. J., Wyatt, A., & Smith, J. E. (2011). Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. PLOS ONE, 6(11), e27973. https://doi.org/10.1371/journal.pone.0027973
2010
Rodriguez-Brito, B., Li, L. L., Wegley, L., Furlan, M., Angly, F., Breitbart, M., Buchanan, J., Desnues, C., Dinsdale, E., Edwards, R., Felts, B., Haynes, M., Liu, H., Lipson, D., Mahaffy, J., Martin-Cuadrado, A. B., Mira, A., Nulton, J., Pasic, L., … Rohwer, F. (2010). Viral and microbial community dynamics in four aquatic environments. Isme Journal, 4(6), 739–751. https://doi.org/10.1038/ismej.2010.1
2009
Thurber, R. V., Haynes, M., Breitbart, M., Wegley, L., & Rohwer, F. (2009). Laboratory procedures to generate viral metagenomes. Nature Protocols, 4(4), 470–483. https://doi.org/10.1038/nprot.2009.10
Vega Thurber, R., Willner-Hall, D., Rodriguez-Mueller, B., Desnues, C., Edwards, R. A., Angly, F., Dinsdale, E., Kelly, L., & Rohwer, F. (2009). Metagenomic analysis of stressed coral holobionts. Environmental Microbiology, 11(8), 2148–2163. https://doi.org/10.1111/j.1462-2920.2009.01935.x
Angly, F. E., Willner, D., Prieto-Davo, A., Edwards, R. A., Schmieder, R., Vega-Thurber, R., Antonopoulos, D. A., Barott, K., Cottrell, M. T., Desnues, C., Dinsdale, E. A., Furlan, M., Haynes, M., Henn, M. R., Hu, Y. F., Kirchman, D. L., McDole, T., McPherson, J. D., Meyer, F., … Rohwer, F. (2009). The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes. Plos Computational Biology, 5(12). https://doi.org/ARTN e1000593 10.1371/journal.pcbi.1000593
2008
Dinsdale, E. A., Pantos, O., Smriga, S., Edwards, R. A., Angly, F., Wegley, L., Hatay, M., Hall, D., Brown, E., Haynes, M., Krause, L., Sala, E., Sandin, S. A., Thurber, R. V., Willis, B. L., Azam, F., Knowlton, N., & Rohwer, F. (2008). Microbial ecology of four coral atolls in the northern Line Islands. PLOS ONE, 3(2). https://doi.org/10.1371/journal.pone.0001584
Desnues, C., Rodriguez-Brito, B., Rayhawk, S., Kelley, S., Tran, T., Haynes, M., Liu, H., Furlan, M., Wegley, L., Chau, B., Ruan, Y. J., Hall, D., Angly, F. E., Edwards, R. A., Li, L. L., Thurber, R. V., Reid, R. P., Siefert, J., Souza, V., … Rohwer, F. (2008). Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature, 452(7185), 340-U5. https://doi.org/10.1038/nature06735
Dinsdale, E. A., Edwards, R. A., Hall, D., Angly, F., Breitbart, M., Brulc, J. M., Furlan, M., Desnues, C., Haynes, M., Li, L. L., McDaniel, L., Moran, M. A., Nelson, K. E., Nilsson, C., Olson, R., Paul, J., Brito, B. R., Ruan, Y. J., Swan, B. K., … Rohwer, F. (2008). Functional metagenomic profiling of nine biomes. Nature, 452(7187), 629-U8. https://doi.org/10.1038/nature06810
Thurber, R. L. V., Barott, K. L., Hall, D., Liu, H., Rodriguez-Mueller, B., Desnues, C., Edwards, R. A., Haynes, M., Angly, F. E., Wegley, L., & Rohwer, F. L. (2008). Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proceedings of the National Academy of Sciences of the United States of America, 105(47), 18413–18418. https://doi.org/10.1073/pnas.0808985105
2007
Beman, J. M., Roberts, K. J., Wegley, L., Rohwer, F., & Francis, C. A. (2007). Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals. Applied and Environmental Microbiology, 73(17), 5642–5647. https://doi.org/10.1128/Aem.00461-07
Wegley, L., Edwards, R., Rodriguez-Brito, B., Liu, H., & Rohwer, F. (2007). Metagenomic analysis of the microbial community associated with the coral Porites astreoides. Environmental Microbiology, 9(11), 2707–2719. https://doi.org/10.1111/j.1462-2920.2007.01383.x
2006
Edwards, R. A., Rodriguez-Brito, B., Wegley, L., Haynes, M., Breitbart, M., Peterson, D. M., Saar, M. O., Alexander, S., Alexander, E. C., & Rohwer, F. (2006). Using pyrosequencing to shed light on deep mine microbial ecology. Bmc Genomics, 7. https://doi.org/Artn 57 10.1186/1471-2164-7-57
Wegley, L., Mosier-Boss, P., Lieberman, S., Andrews, J., Graff-Baker, A., & Rohwer, F. (2006). Rapid estimation of microbial numbers in water using bulk fluorescence. Environmental Microbiology, 8(10), 1775–1782. https://doi.org/10.1111/j.1462-2920.2006.01062.x
2004
Breitbart, M., Wegley, L., Leeds, S., Schoenfeld, T., & Rohwer, F. (2004). Phage community dynamics in hot springs. Applied and Environmental Microbiology, 70(3), 1633–1640. https://doi.org/10.1128/Aem.70.3.1633-1640.2004
Sano, E., Carlson, S., Wegley, L., & Rohwer, F. (2004). Movement of viruses between biomes. Applied and Environmental Microbiology, 70(10), 5842–5846. https://doi.org/10.1128/Aem.70.10.5842-5846.2004
Casas, V., Kline, D. I., Wegley, L., Yu, Y. N., Breitbart, M., & Rohwer, F. (2004). Widespread association of a Rickettsiales-like bacterium with reef-building corals. Environmental Microbiology, 6(11), 1137–1148. https://doi.org/10.1111/j.1462-2920.2004.00647.x
Wegley, L., Yu, Y. N., Breitbart, M., Casas, V., Kline, D. I., & Rohwer, F. (2004). Coral-associated Archaea. Marine Ecology-Progress Series, 273, 89–96. https://doi.org/10.3354/meps273089
2003
Mosier-Boss, P. A., Lieberman, S. H., Andrews, J. M., Rohwer, F. L., Wegley, L. E., & Breitbart, M. (2003). Use of fluorescently labeled phage in the detection and identification of bacterial species. Applied Spectroscopy, 57(9), 1138–1144. https://doi.org/Doi 10.1366/00037020360696008
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https://wegleykellylab.ucsd.edu/wp-content/plugins/zotpress/
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Quinlan, Z. A., Nelson, C. E., Koester, I., Petras, D., Nothias, L., Comstock, J., White, B. M., Aluwihare, L. I., Bailey, B. A., Carlson, C. A., Dorrestein, P. C., Haas, A. F., & Wegley Kelly, L. (2025). Microbial Community Metabolism of Coral Reef Exometabolomes Broadens the Chemodiversity of Labile Dissolved Organic Matter. Environmental Microbiology, 27(3), e70064. https://doi.org/10.1111/1462-2920.70064
Thobor, B. M., Haas, A. F., Wild, C., Nelson, C. E., Wegley Kelly, L., Hehemann, J.-H., Arts, M. G. I., Boer, M., Buck-Wiese, H., Nguyen, N. P., Hellige, I., & Mueller, B. (2024). Coral high molecular weight carbohydrates support opportunistic microbes in bacterioplankton from an algae-dominated reef. mSystems, e00832-24. https://doi.org/10.1128/msystems.00832-24
Oliver, A., Podell, S., Wegley Kelly, L., Sparagon, W. J., Plominsky, A. M., Nelson, R. S., Laurens, L. M. L., Augyte, S., Sims, N. A., Nelson, C. E., & Allen, E. E. (2024). Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. mBio, e00496-24. https://doi.org/10.1128/mbio.00496-24
Yus, J., Nixon, E. N., Li, J., Noriega Gimenez, J., Bennett, M.-J., Flores, D., Marhaver, K. L., Wegley Kelly, L., Espinosa-Marzal, R. M., & Wagoner Johnson, A. J. (2024). Composite substrates for coral larval settlement and reef restoration based on natural hydraulic lime and inorganic strontium and magnesium compounds. Ecological Engineering, 202, 107236. https://doi.org/10.1016/j.ecoleng.2024.107236
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Nelson, C. E., Wegley Kelly, L., & Haas, A. F. (2023). Microbial Interactions with Dissolved Organic Matter Are Central to Coral Reef Ecosystem Function and Resilience. Annual Review of Marine Science, 15(1), 431–460. https://doi.org/10.1146/annurev-marine-042121-080917
Quinlan, Z. A., Koester, I., Aron, A. T., Petras, D., Aluwihare, L. I., Dorrestein, P. C., Nelson, C. E., & Wegley Kelly, L. (2022). ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and In Silico Metabolite Structure Prediction. Metabolites, 12(12), 1275. https://doi.org/10.3390/metabo12121275
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James, A. K., Kelly, L. W., Nelson, C. E., Wilbanks, E. G., & Carlson, C. A. (2019). Elevated pCO(2) alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter. Environmental Microbiology, 21(2), 541–556. https://doi.org/10.1111/1462-2920.14484
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Linda Wegley Kelly, Andreas F. Haas, & Craig E. Nelson. (2018). Ecosystem microbiology of coral reefs: Linking genomic, metabolomic, and biogeochemical Dynamics from animal symbioses to reefscape processes. mSystems, 3(2), e00162-17. https://doi.org/doi:10.1128/mSystems.00162-17
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Quistad, S. D., Lim, Y. W., Silva, G. G. Z., Nelson, C. E., Haas, A. F., Kelly, L. W., Edwards, R. A., & Rohwer, F. L. (2016). Using viromes to predict novel immune proteins in non-model organisms. Proceedings of the Royal Society B: Biological Sciences, 283(1837), 20161200. https://doi.org/10.1098/rspb.2016.1200
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